Copy selection wrong size

Using the box selector if I select a section of an image then hold alt and remove portions of the selection then copy it to the clipboard it will copy the full size of all the selection boxes I used to get my current selection, including the ones used to remove parts of the selection.  Only the portion of the image that is currently actually selected is copied but it expands the size to include the union of all the selectors I drew and fills it in with transparency, so if I then make a new single image document and use "Use clipboard size" it will create a canvas that is bigger than the copied selection.
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